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The Top 23 Java Ngs Open Source Projects

Open source projects categorized as Java Ngs
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Ngb ⭐ 151
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
most recent commit 3 months ago
Cloud Pipeline ⭐ 137
Cloud agnostic genomics analysis, scientific computation and storage platform
most recent commit 3 months ago
Trimmomatic ⭐ 74
Read trimming tool for Illumina NGS data.
most recent commit 9 years ago
Abra2 ⭐ 69
ABRA2
most recent commit 3 years ago
Haplogrep Cmd ⭐ 64
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
most recent commit a year ago
Seqmonk ⭐ 45
SeqMonk NGS visualisation and analysis tool
most recent commit 8 months ago
Lrscaf ⭐ 34
TGS scaffolding
most recent commit 2 years ago
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10most recent commit 8 months ago
Seqware ⭐ 27
This is the SeqWare Project's main repo.
most recent commit 6 years ago
Pheno4j ⭐ 24
Pheno4j: a graph based HPO to NGS database
most recent commit 5 years ago
Pathos ⭐ 22
PathOS is a clinical application for filtering, analysing and reporting on NGS variants
most recent commit 3 years ago
Ngs ⭐ 17
Next generation sequencing (NGS/HTS) tools.
dependent packages 1total releases 9most recent commit 4 years ago
Hpg Bigdata ⭐ 17
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
most recent commit 6 years ago
Damageprofiler ⭐ 15
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
most recent commit 5 months ago
Virapipe ⭐ 13
ViraPipe is a Apache Spark based scalable pipeline for metagenome analysis from NGS read data
most recent commit 6 years ago
Cliquesnv ⭐ 13
most recent commit a year ago
Bg7 ⭐ 13
bacterial genome annotation system
most recent commit 9 years ago
Seal ⭐ 7
Hadoop-based suite of tools for processing NGS data
most recent commit 5 years ago
Nats Spring Boot Starter ⭐ 7
Spring Boot starter for NATS
most recent commit 3 years ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
Mitobench ⭐ 6
The mitochondrial workbench
most recent commit 3 years ago
The 3 Most Depended On Java Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10latest release February 09, 2021most recent commit 8 months ago
Ngs ⭐ 17
Next generation sequencing (NGS/HTS) tools.
dependent packages 1total releases 9latest release June 22, 2015most recent commit 4 years ago
The 3 Latest Releases In Java Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10latest release February 09, 2021most recent commit 8 months ago
Ngs ⭐ 17
Next generation sequencing (NGS/HTS) tools.
dependent packages 1total releases 9latest release June 22, 2015most recent commit 4 years ago
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