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The Top 11 Sequencing Illumina Open Source Projects

Open source projects categorized as Sequencing Illumina
Categories > Illumina
Categories > Science > Sequencing
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Genomics ⭐ 154
A collection of scripts and notes related to genomics and bioinformatics
most recent commit 2 years ago
Ampliseq ⭐ 141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
most recent commit 3 months ago
Aldy ⭐ 43
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
most recent commit 5 months ago
Awesome Sequencing Tech Papers ⭐ 26
A collection of publications on comparison of high-throughput sequencing technologies.
most recent commit 5 months ago
Checkqc ⭐ 23
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
most recent commit 5 months ago
Defq ⭐ 20
Ultra-fast Multi-threaded FASTQ Demultiplexing
most recent commit 6 years ago
Seqmaker.jl ⭐ 19
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
most recent commit 7 years ago
Varvamp ⭐ 15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
total releases 15most recent commit 3 months ago
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9most recent commit 5 months ago
16s Rdna V3 V4 ⭐ 8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
most recent commit 3 years ago
The 3 Latest Releases In Sequencing Illumina Open Source Projects
Sandy ⭐ 14
A straightforward and complete next-generation sequencing read simulator
total releases 9latest release September 19, 2023most recent commit 5 months ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
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