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The Top 14 Gwas Open Source Projects

Open source projects categorized as Gwas
Categories > Gwas
Locusfocus ⭐ 6
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
most recent commit 2 years ago
Baghera ⭐ 6
Bayesian Gene Heritability Analysis from GWAS summary statistics
most recent commit 2 years ago
Ttplot ⭐ 6
Tao Yan's Plot Toolkit
most recent commit 5 years ago
Cleansumstats ⭐ 6
Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
most recent commit 5 months ago
Timshel 2020 ⭐ 6
Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)
most recent commit 3 years ago
Quack ⭐ 6
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)
most recent commit 3 years ago
Somalogic ⭐ 6
SomaLogic data analysis
most recent commit 7 months ago
Postgwas Tools ⭐ 5
These are tools for post GWAS analysis. Please see below link as a document for install and use.
most recent commit a year ago
Gprs ⭐ 5
most recent commit a year ago
Pygwasvcf ⭐ 5
Python library for reading GWAS summary statistics in GWAS-VCF files
total releases 1most recent commit 2 years ago
Cmm ⭐ 5
Coupled Mixed Model
most recent commit 3 years ago
Pcsstools ⭐ 5
Tools for regression using pre-computed summary statistics
total releases 2most recent commit 10 months ago
Panfeed ⭐ 5
A k-mer counter that streams gene-cluster specific k-mers, while keeping k-mer positional information. Useful for microbial GWAS analyses with higher interpretability.
total releases 8most recent commit 8 months ago
Ctlmapping ⭐ 5
Correlated Trait Locus (CTL) mapping
most recent commit 6 months ago
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