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The Top 13 Gfa Open Source Projects

Open source projects categorized as Gfa
Categories > Gfa
Gfa Spec ⭐ 185
Graphical Fragment Assembly (GFA) Format Specification
most recent commit a year ago
Panacus ⭐ 53
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
most recent commit 7 months ago
Zplgfa ⭐ 45
#Golang package and cli tool for converting to #ZPL (from PNG, JPEG and GIF) for @ZebraTechnology-printers
total releases 13most recent commit a year ago
Reveal ⭐ 39
Graph based multi genome aligner
total releases 2most recent commit 3 years ago
Gfapy ⭐ 39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
dependent packages 1total releases 16most recent commit 2 years agopypi gfapy} Downloads
Gfakluge ⭐ 36
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
most recent commit 2 years ago
Gfaffix ⭐ 32
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
most recent commit 8 months ago
Svaha2 ⭐ 14
Linear-time, low-memory construction of variation graphs
most recent commit 4 years ago
Rs Gfatovcf ⭐ 12
Rust implementation of Flavia95's GFAtoVCF
most recent commit 2 years ago
Vgpop ⭐ 11
Population genetics analysis on VG
most recent commit 3 years ago
Biograph.jl ⭐ 10
A Julia package for handle genome graph in the GFA format.
most recent commit 2 years ago
Spodgi ⭐ 7
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
most recent commit 4 years ago
Svaha ⭐ 5
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
most recent commit 6 years ago
The 3 Latest Releases In Gfa Open Source Projects
Gfapy ⭐ 39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
dependent packages 1total releases 16latest release February 03, 2022most recent commit 2 years agopypi gfapy} Downloads
Reveal ⭐ 39
Graph based multi genome aligner
total releases 2latest release November 22, 2019most recent commit 3 years ago
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