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The Top 23 Enrichment Analysis Open Source Projects

Open source projects categorized as Enrichment Analysis
Categories > Enrichment Analysis
Clusterprofiler ⭐ 898
📊 A universal enrichment tool for interpreting omics data
most recent commit 4 months ago
Gseapy ⭐ 461
Gene Set Enrichment Analysis in Python
dependent packages 42total releases 98most recent commit 4 months agopypi gseapy} Downloads
Enrichplot ⭐ 197
Visualization of Functional Enrichment Result
most recent commit 5 months ago
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10most recent commit 3 months agopypi decoupler} Downloads
Dose ⭐ 105
😷 Disease Ontology Semantic and Enrichment analysis
most recent commit 3 months ago
Msigdbr ⭐ 52
MSigDB gene sets for multiple organisms in a tidy data format
dependent packages 11total releases 7most recent commit 2 years ago
Rss ⭐ 44
Regression with Summary Statistics.
most recent commit 7 months ago
Genekitr ⭐ 37
🧬 Gene analysis toolkit based on R
total releases 12most recent commit 9 months ago
Reactomepa ⭐ 34
Reactome Pathway Analysis
most recent commit 4 months ago
Safepy ⭐ 34
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
most recent commit 4 months ago
Sig Bio Shiny ⭐ 25
An interactive application suite/interface for doing Exploration and Significant Biology on a set of Genes.
most recent commit 4 years ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 5 months ago
Rtfbs_db ⭐ 21
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
most recent commit 5 years ago
Genescf_inactive ⭐ 20
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
most recent commit 3 years ago
Pygna ⭐ 20
A Python package for gene network analysis
total releases 35most recent commit 2 years ago
Gwena ⭐ 15
Gene Co-expression Network analysis pipeline
most recent commit 10 months ago
Rss Net ⭐ 15
Regression with Summary Statistics exploiting Network Topology.
most recent commit 4 months ago
Enrich_omics ⭐ 15
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
most recent commit 5 months ago
Rbioapi ⭐ 15
rbioapi: User-Friendly R Interface to Biologic Web Services' API
total releases 3most recent commit 5 months ago
Genescf ⭐ 14
Gene Set Clustering based on Functional annotation
most recent commit 2 years ago
Bgeedb_r ⭐ 13
Source code of the R packge BgeeDB to use data from the Bgee database
most recent commit 5 months ago
Interactive Enrichment Analysis ⭐ 12
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
most recent commit 3 months ago
Enrichment_analysis ⭐ 10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
most recent commit 9 months ago
The 3 Most Depended On Enrichment Analysis Open Source Projects
Gseapy ⭐ 461
Gene Set Enrichment Analysis in Python
dependent packages 42total releases 98latest release November 10, 2023most recent commit 4 months agopypi gseapy} Downloads
Msigdbr ⭐ 52
MSigDB gene sets for multiple organisms in a tidy data format
dependent packages 11total releases 7latest release March 30, 2022most recent commit 2 years ago
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10latest release August 31, 2023most recent commit 3 months agopypi decoupler} Downloads
The 8 Latest Releases In Enrichment Analysis Open Source Projects
Gseapy ⭐ 461
Gene Set Enrichment Analysis in Python
dependent packages 42total releases 98latest release November 10, 2023most recent commit 4 months agopypi gseapy} Downloads
Genekitr ⭐ 37
🧬 Gene analysis toolkit based on R
total releases 12latest release September 07, 2023most recent commit 9 months ago
Decoupler Py ⭐ 112
Python package to perform enrichment analysis from omics data.
dependent packages 3total releases 10latest release August 31, 2023most recent commit 3 months agopypi decoupler} Downloads
Keggtools ⭐ 9
Library for KEGG pathway enrichment analysis
total releases 7latest release June 05, 2023most recent commit a year ago
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
total releases 4latest release May 18, 2022most recent commit 2 years ago
Rbioapi ⭐ 15
rbioapi: User-Friendly R Interface to Biologic Web Services' API
total releases 3latest release April 05, 2022most recent commit 5 months ago
Msigdbr ⭐ 52
MSigDB gene sets for multiple organisms in a tidy data format
dependent packages 11total releases 7latest release March 30, 2022most recent commit 2 years ago
Pygna ⭐ 20
A Python package for gene network analysis
total releases 35latest release January 05, 2022most recent commit 2 years ago
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