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The Top 23 Diffusion Mri Open Source Projects

Open source projects categorized as Diffusion Mri
Categories > Diffusion Mri
Dipy ⭐ 647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
most recent commit 4 months ago
Qsiprep ⭐ 120
Preprocessing and reconstruction of diffusion MRI
total releases 50most recent commit 4 months ago
Ddm2 ⭐ 98
Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models, ICLR2023
most recent commit 4 months ago
Komamri.jl ⭐ 77
Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.
most recent commit 4 months ago
Micapipe ⭐ 69
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
most recent commit 4 months ago
Slicerdmri ⭐ 65
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
most recent commit 4 months ago
Dmipy ⭐ 64
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
total releases 4most recent commit 2 years ago
Dmriprep ⭐ 61
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
total releases 8most recent commit 6 months ago
Mitk Diffusion ⭐ 56
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
most recent commit 7 months ago
Whitematteranalysis ⭐ 56
White matter tractography clustering and more...
most recent commit 4 months ago
Synb0 Disco ⭐ 48
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
most recent commit 7 months ago
Life ⭐ 29
Please use the new version of LiFE: www.github.com/brain-life/encode
most recent commit 7 years ago
Encode ⭐ 28
Method for encoding brain connectomes in multidimensional arrays (tensors).
most recent commit 3 years ago
Mritoolkit ⭐ 22
most recent commit 4 months ago
Nlsam ⭐ 22
The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI
most recent commit 4 months ago
Org Atlases ⭐ 21
ORG Fiber Clustering White Matter Atlas
most recent commit 7 months ago
Disimpy ⭐ 21
Massively parallel Monte Carlo diffusion MR simulator written in Python.
total releases 3most recent commit 4 months ago
Sdc Bids Dmri ⭐ 16
Introduction to dMRI
most recent commit 6 months ago
Dw Possum ⭐ 14
Simulate realistic diffusion-weighted MR data
most recent commit a year ago
Smi ⭐ 14
Toolbox for parameter estimation of the Standard Model of diffusion in white matter
most recent commit 6 months ago
Qit ⭐ 14
A repository for the Quantitative Imaging Toolkit (QIT)
most recent commit 7 months ago
Detect ⭐ 13
Anomaly detection framework for Tractometry
most recent commit 9 months ago
Pydesigner ⭐ 11
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
most recent commit 7 months ago
The 7 Latest Releases In Diffusion Mri Open Source Projects
Qsiprep ⭐ 120
Preprocessing and reconstruction of diffusion MRI
total releases 50latest release October 05, 2023most recent commit 4 months ago
Erwin ⭐ 10
Quantitative MRI toolbox in Python
total releases 7latest release August 09, 2023most recent commit 9 months ago
Autodmri ⭐ 6
Automated characterization of noise distributions in diffusion MRI data
total releases 8latest release November 04, 2022most recent commit 4 months ago
Trk Io ⭐ 6
TrackVis (*.trk) reader and writer
total releases 58latest release March 11, 2022most recent commit 7 months ago
Disimpy ⭐ 21
Massively parallel Monte Carlo diffusion MR simulator written in Python.
total releases 3latest release January 04, 2022most recent commit 4 months ago
Dmipy ⭐ 64
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
total releases 4latest release January 20, 2021most recent commit 2 years ago
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