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The Top 20 Dataset Genomics Open Source Projects

Open source projects categorized as Dataset Genomics
Categories > Data Processing > Dataset
Categories > Science > Genomics
Genomicsnotebook ⭐ 84
Jupyter Notebooks on Azure for Genomics Data Analysis
most recent commit 7 months ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8most recent commit 6 months ago
Duo ⭐ 48
Ontology for consent codes and data use requirements
most recent commit 2 years ago
Mulan ⭐ 47
most recent commit 2 years ago
Chm Eval ⭐ 37
most recent commit 4 years ago
Mindthegap ⭐ 30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
most recent commit 2 years ago
Cbioportaldata ⭐ 29
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
most recent commit 4 months ago
Zinbwavezinger ⭐ 21
Integrating zingeR with ZINB-WaVE weights
most recent commit 6 years ago
Wgs2ncbi ⭐ 18
Toolkit for preparing genomes for submission to NCBI
most recent commit 3 years ago
Transit ⭐ 17
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
most recent commit 5 months ago
Genoml2 ⭐ 17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
most recent commit 7 months ago
Visium Clustergrammer2 ⭐ 14
Spatial Transcriptomics Dashboard
most recent commit 4 years ago
Gmql ⭐ 14
GMQL - GenoMetric Query Language
dependent packages 7total releases 2most recent commit 3 years ago
Biobtree ⭐ 13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
total releases 19most recent commit 2 years ago
Cancer_data ⭐ 11
A unified downloader+preprocessor for cancer genomics datasets
total releases 12most recent commit a year ago
Scgv ⭐ 8
SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer
most recent commit 2 years ago
Biopyramid ⭐ 7
Framework for developing an online genomics application
most recent commit 3 years ago
Clinvar Kaggle ⭐ 6
Scripts related to the ClinVar conflicting classifications dataset on Kaggle
most recent commit 4 years ago
Tensorflow_tutorial_genomics ⭐ 5
A collection of TensorFlow tutorials to analyze genomics datasets
most recent commit 6 years ago
The 4 Latest Releases In Dataset Genomics Open Source Projects
Genomic_benchmarks ⭐ 52
Benchmarks for classification of genomic sequences
total releases 8latest release August 10, 2022most recent commit 6 months ago
Cancer_data ⭐ 11
A unified downloader+preprocessor for cancer genomics datasets
total releases 12latest release January 08, 2022most recent commit a year ago
Biobtree ⭐ 13
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes
total releases 19latest release March 30, 2021most recent commit 2 years ago
Gmql ⭐ 14
GMQL - GenoMetric Query Language
dependent packages 7total releases 2latest release July 04, 2018most recent commit 3 years ago
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