Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Jupyter Notebook Computational Biology Open Source Projects

Open source projects categorized as Jupyter Notebook Computational Biology
Categories > Computational Biology
Categories > Data Processing > Jupyter Notebook
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
3dmol.js ⭐ 720
WebGL accelerated JavaScript molecular graphics library
dependent packages 9total releases 37most recent commit 3 months agonpm 3dmol} Downloads
Jupyter_dock ⭐ 215
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
most recent commit 9 months ago
Vde ⭐ 161
Variational Autoencoder for Dimensionality Reduction of Time-Series
most recent commit 2 years ago
Tangram ⭐ 153
Spatial alignment of single cell transcriptomic data.
total releases 11most recent commit a year ago
Flexs ⭐ 112
Fitness landscape exploration sandbox for biological sequence design.
total releases 9most recent commit a year ago
Computational Cryoem ⭐ 73
A curated list of awesome computational cryo-EM methods.
most recent commit 3 months ago
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7most recent commit 10 months ago
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9most recent commit 4 months agopypi glycowork} Downloads
Protein Transformer ⭐ 25
Predicting protein structure through sequence modeling
most recent commit 4 years ago
Tape ⭐ 25
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
total releases 24most recent commit a year ago
Teaching ⭐ 20
Courses & workshops led by members of the Krishnan Lab.
most recent commit 2 years ago
Decode ⭐ 19
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
most recent commit a year ago
Bioinformatics ⭐ 17
Course materials for Computational Biology and Bioinformatics - BI462
most recent commit 6 years ago
Asapdiscovery ⭐ 15
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
most recent commit 3 months ago
Deepsea ⭐ 14
DeepSEA in TensorFlow
most recent commit 7 years ago
Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
most recent commit a year ago
Deep Learning Health Life Sciences ⭐ 8
Workshop on Deep Learning for Health and Life Sciences
most recent commit 3 years ago
Julia Theosysbio ⭐ 8
most recent commit 7 years ago
Cryo Ralib ⭐ 8
most recent commit 9 months ago
Optimus_bind_sample ⭐ 7
Designed to optimize the time/accuracy trade-off in predicting the effects of mutations on protein-protein binding
most recent commit 2 years ago
Iscb Diversity ⭐ 7
Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics
most recent commit 3 years ago
Genomenlp ⭐ 5
most recent commit 4 months ago
The 3 Most Depended On Jupyter Notebook Computational Biology Open Source Projects
3dmol.js ⭐ 720
WebGL accelerated JavaScript molecular graphics library
dependent packages 9total releases 37latest release October 23, 2023most recent commit 3 months agonpm 3dmol} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
The 7 Latest Releases In Jupyter Notebook Computational Biology Open Source Projects
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
3dmol.js ⭐ 720
WebGL accelerated JavaScript molecular graphics library
dependent packages 9total releases 37latest release October 23, 2023most recent commit 3 months agonpm 3dmol} Downloads
Glycowork ⭐ 46
Package for processing and analyzing glycans and their role in biology.
dependent packages 1total releases 9latest release August 27, 2023most recent commit 4 months agopypi glycowork} Downloads
Cello ⭐ 53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
total releases 7latest release September 28, 2022most recent commit 10 months ago
Tangram ⭐ 153
Spatial alignment of single cell transcriptomic data.
total releases 11latest release June 17, 2022most recent commit a year ago
Flexs ⭐ 112
Fitness landscape exploration sandbox for biological sequence design.
total releases 9latest release January 21, 2021most recent commit a year ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.