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The Top 23 C Sequencing Open Source Projects

Open source projects categorized as C Sequencing
Samtools ⭐ 1,496
Tools (written in C using htslib) for manipulating next-generation sequencing data
most recent commit 3 months ago
Soapdenovo2 ⭐ 197
Next generation sequencing reads de novo assembler.
most recent commit 6 months ago
Wgsim ⭐ 188
Reads simulator
most recent commit 3 years ago
Lofreq ⭐ 84
LoFreq Star: Sensitive variant calling from sequencing data
most recent commit 2 years ago
Hipstr ⭐ 69
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
most recent commit 3 years ago
Exomedepth ⭐ 46
ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
most recent commit 7 months ago
Aldy ⭐ 43
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
most recent commit 5 months ago
Lrsim ⭐ 38
10x Genomics Reads Simulator
most recent commit 5 years ago
Vht ⭐ 38
vahatraker - a live midi sequencer/tracker for JACK/GTK
total releases 15most recent commit 8 months ago
Pblat ⭐ 37
parallelized blat with multi-threads support
most recent commit a year ago
Igor ⭐ 35
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
most recent commit 3 years ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Plastid ⭐ 32
Position-wise analysis of sequencing and genomics data
total releases 12most recent commit 2 years ago
Hpg Aligner ⭐ 32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
most recent commit 7 years ago
Lordfast ⭐ 31
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
most recent commit 5 years ago
Fastq_utils ⭐ 29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
most recent commit a year ago
Seqminer ⭐ 28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
dependent packages 8total releases 39most recent commit 5 months ago
Varianttools ⭐ 27
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
most recent commit 2 years ago
Igenomics ⭐ 26
The first app for Mobile DNA Sequence Alignment and Analysis
most recent commit 3 years ago
Samstat ⭐ 20
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
most recent commit 9 months ago
Clamms ⭐ 20
CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
most recent commit 6 years ago
Defq ⭐ 20
Ultra-fast Multi-threaded FASTQ Demultiplexing
most recent commit 6 years ago
Crisp ⭐ 19
Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
most recent commit 9 months ago
The 3 Latest Releases In C Sequencing Open Source Projects
Seqminer ⭐ 28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
dependent packages 8total releases 39latest release September 02, 2023most recent commit 5 months ago
Plastid ⭐ 32
Position-wise analysis of sequencing and genomics data
total releases 12latest release May 05, 2022most recent commit 2 years ago
Vht ⭐ 38
vahatraker - a live midi sequencer/tracker for JACK/GTK
total releases 15latest release June 21, 2020most recent commit 8 months ago
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