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The Top 23 C Plus Plus Ngs Open Source Projects

Open source projects categorized as C Plus Plus Ngs
Categories > Programming Languages > C Plus Plus
Categories > Science > Ngs
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Ngs Bits ⭐ 121
Short-read sequencing tools
most recent commit 3 months ago
Ngs ⭐ 114
NGS Language Bindings
dependent packages 1total releases 3most recent commit a year ago
Gencore ⭐ 103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
most recent commit 6 months ago
Ngs Tools ⭐ 99
most recent commit 4 months ago
Rvtests ⭐ 95
Rare variant test software for next generation sequencing data
most recent commit 3 years ago
Bwa Meme ⭐ 92
BWA-MEME: Faster BWA-MEM2 using learned-index
most recent commit 6 months ago
Tpmcalculator ⭐ 74
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
most recent commit 3 years ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Bayestyper ⭐ 52
A method for variant graph genotyping based on exact alignment of k-mers
most recent commit 5 years ago
Consent ⭐ 40
Scalable long read self-correction and assembly polishing with multiple sequence alignment
most recent commit 3 years ago
Ococo ⭐ 39
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
most recent commit 5 years ago
Gamgee ⭐ 39
A C++14 library for NGS data formats
most recent commit 5 years ago
Ngsld ⭐ 33
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
most recent commit 5 months ago
Mindthegap ⭐ 30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
most recent commit 2 years ago
Gam Ngs ⭐ 26
Genomic Assemblies Merger for NGS
most recent commit 9 years ago
Fda Hive ⭐ 25
FDA High-performance Integrated Virtual Environment (HIVE)
most recent commit 7 years ago
Biokanga ⭐ 22
An integrated high performance bioinformatics toolkit
most recent commit 5 years ago
Haploclique ⭐ 21
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
most recent commit 6 years ago
Fastquick ⭐ 18
Ultra Fast NGS Data QC Tool
most recent commit 3 years ago
Nanovar Archived ⭐ 17
Archived version 1.0.2
most recent commit 4 years ago
The 4 Latest Releases In C Plus Plus Ngs Open Source Projects
Nsearch ⭐ 10
Next-Generation Sequencing (NGS) Data Processing Tool & Library
total releases 1latest release March 12, 2022most recent commit a year ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 6 months ago
Ngs ⭐ 114
NGS Language Bindings
dependent packages 1total releases 3latest release May 14, 2018most recent commit a year ago
Ngs_server ⭐ 7
Ultra Lightweight NGS (BAM/VCF) Server
total releases 10latest release June 04, 2012most recent commit 12 years ago
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