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The Top 23 Research Bioinformatics Open Source Projects

Open source projects categorized as Research Bioinformatics
Categories > Data Processing > Bioinformatics
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21most recent commit 3 months ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33most recent commit 8 months ago
Artemis ⭐ 191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
most recent commit a year ago
Snp Sites ⭐ 173
Finds SNP sites from a multi-FASTA alignment file
most recent commit 3 years ago
Antismash ⭐ 155
antiSMASH
most recent commit 5 months ago
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54most recent commit a year agopypi ariba} Downloads
Gubbins ⭐ 133
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
most recent commit 5 months ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Nucleoatac ⭐ 78
nucleosome calling using ATAC-seq
most recent commit 5 years ago
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11most recent commit 4 years ago
Czid Web ⭐ 75
Infectious Disease Sequencing Platform
most recent commit 3 months ago
Cytomine Core ⭐ 73
Cytomine-Core is the main web server implementing the Cytomine API
most recent commit a year ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3most recent commit 6 months ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21most recent commit 2 years agopypi pyfastaq} Downloads
Assembly_improvement ⭐ 39
Improve the quality of a denovo assembly by scaffolding and gap filling
most recent commit 4 years ago
Pathogen Informatics Training ⭐ 38
most recent commit 3 years ago
Iva ⭐ 37
de novo virus assembler of Illumina paired reads
total releases 16most recent commit 3 years ago
Orca ⭐ 34
🐳 Genomics Research Container Architecture
most recent commit 5 years ago
Manyfold ⭐ 28
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
most recent commit a year ago
Kogia ⭐ 22
Docker containers for bioinformatics with a small footprint
most recent commit 8 months ago
Gff3toembl ⭐ 20
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
most recent commit 5 years ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6most recent commit 4 years ago
The 2 Most Depended On Research Bioinformatics Open Source Projects
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54latest release September 07, 2020most recent commit a year agopypi ariba} Downloads
The 10 Latest Releases In Research Bioinformatics Open Source Projects
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21latest release April 11, 2022most recent commit 3 months ago
Slurmr ⭐ 50
slurmR: A Lightweight Wrapper for Slurm
total releases 3latest release September 03, 2021most recent commit 6 months ago
Ariba ⭐ 135
Antimicrobial Resistance Identification By Assembly
dependent packages 1total releases 54latest release September 07, 2020most recent commit a year agopypi ariba} Downloads
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6latest release December 05, 2019most recent commit 4 years ago
Bio Tradis ⭐ 15
A set of tools to analyse the output from TraDIS analyses
total releases 14latest release December 04, 2019most recent commit 9 months ago
Albatradis ⭐ 7
Comparative TraDIS analysis
total releases 2latest release December 03, 2019most recent commit a year ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83latest release November 06, 2019most recent commit 2 years ago
Fastaq ⭐ 45
Python3 scripts to manipulate FASTA and FASTQ files
dependent packages 7total releases 21latest release February 19, 2018most recent commit 2 years agopypi pyfastaq} Downloads
Circlator ⭐ 193
A tool to circularize genome assemblies
total releases 33latest release January 31, 2018most recent commit 8 months ago
Iva ⭐ 37
de novo virus assembler of Illumina paired reads
total releases 16latest release January 25, 2018most recent commit 3 years ago
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