Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 R Bioinformatics Single Cell Open Source Projects

Open source projects categorized as R Bioinformatics Single Cell
Categories > Data Processing > Bioinformatics
Categories > Single Cell
Immunarch ⭐ 256
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
most recent commit 8 months ago
Youtubetutorials ⭐ 180
most recent commit 4 months ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Singlecellhaystack ⭐ 68
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
most recent commit 4 months ago
Scatac Pro ⭐ 64
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
most recent commit 10 months ago
Single Cell Training ⭐ 63
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
most recent commit 5 months ago
Scmerge ⭐ 53
Statistical approach for removing unwanted variation from multiple single-cell datasets
most recent commit 9 months ago
Sscclust ⭐ 32
simpler single cell RNAseq data clustering
most recent commit a year ago
Cytometry Clustering Comparison ⭐ 30
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
most recent commit 7 years ago
Csbb Shiny ⭐ 28
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
most recent commit a year ago
Seuratv3wizard ⭐ 26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
most recent commit 4 years ago
Citefuse ⭐ 23
CiteFuse:
most recent commit a year ago
Beyondcell ⭐ 23
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments.
most recent commit 9 months ago
Netsmooth ⭐ 18
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
most recent commit 4 years ago
Muto_wilson_ncomm_2020 ⭐ 17
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
most recent commit a year ago
Splatter Paper ⭐ 15
Data and analysis for the Splatter paper
most recent commit 6 years ago
Bgeedb_r ⭐ 13
Source code of the R packge BgeeDB to use data from the Bgee database
most recent commit 5 months ago
Clustassess ⭐ 13
Tools for assessing clustering robustness
total releases 3most recent commit 2 years ago
Dendro ⭐ 11
Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
most recent commit 4 years ago
Tidytof ⭐ 10
An R package for analyzing high-dimensional cytometry data using the tidyverse.
most recent commit 8 months ago
Mtd ⭐ 8
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
most recent commit a year ago
Dea_seurat ⭐ 6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
most recent commit 4 months ago
Scruff ⭐ 6
Single Cell RNA-seq UMI Filtering Facilitator
most recent commit a year ago
Popular Data Processing Categories
Jupyter Notebook
Dataset
Sql
Validation
Pipeline
Translation
Data Science
Classification
Transaction
Scraper
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.