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The Top 15 Bioinformatics Pdb Protein Structure Open Source Projects

Open source projects categorized as Bioinformatics Pdb Protein Structure
Categories > Data Processing > Bioinformatics
Categories > Protein Structure
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20most recent commit 8 months agopypi biopandas} Downloads
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 9 months agopypi plip} Downloads
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 4 months ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 4 months ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
most recent commit 3 months ago
Lightdock Python2.7 ⭐ 20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 4 years ago
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5most recent commit a year ago
Pose ⭐ 10
A bare metal Python library for building and manipulating protein molecular structures
most recent commit 5 months ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1most recent commit 2 years ago
Pdb2uniprot ⭐ 7
Convert PDB residues to their Uniprot equivalents
most recent commit 4 years ago
Surfstamp Public ⭐ 7
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
most recent commit 2 years ago
Python_scripts ⭐ 7
scripts for parsing PDB, fasta, and GO
most recent commit 3 years ago
Biojava Notebooks ⭐ 6
BioJava examples in Jupyter Notebooks
most recent commit 5 years ago
Rfold ⭐ 5
a set of classes and submodules to build, manipulate and analyse three-dimensional protein structures.
most recent commit 5 years ago
The 3 Most Depended On Bioinformatics Pdb Protein Structure Open Source Projects
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 8 months agopypi biopandas} Downloads
The 6 Latest Releases In Bioinformatics Pdb Protein Structure Open Source Projects
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 8 months agopypi biopandas} Downloads
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5latest release December 03, 2020most recent commit a year ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1latest release April 28, 2020most recent commit 2 years ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
latest release December 21, 2017most recent commit 3 months ago
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