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The Top 20 Bioinformatics Metabolomics Open Source Projects

Open source projects categorized as Bioinformatics Metabolomics
Categories > Data Processing > Bioinformatics
Categories > Metabolomics
Sirius ⭐ 66
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
most recent commit 6 months ago
Sirius Libs ⭐ 45
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
most recent commit 10 months ago
Metaspace ⭐ 39
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
total releases 32most recent commit 4 months ago
Chemrich ⭐ 19
Chemical Similarity Enrichment analysis of metabolomics datasets
most recent commit a year ago
Omicssuite.github.io ⭐ 15
OmicsSuite website for releasing new version.
most recent commit 4 months ago
Buddy_metabolomics ⭐ 12
Molecular formula discovery via bottom-up MS/MS interrogation
most recent commit 6 months ago
Chromatographr ⭐ 11
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
most recent commit 5 months ago
Pomashiny ⭐ 11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
most recent commit a year ago
Msbuddy ⭐ 11
a python package for molecular formula analysis in MS-based small molecule studies
most recent commit 3 months ago
Mbpls ⭐ 10
(Multiblock) Partial Least Squares Regression for Python
dependent packages 2total releases 15most recent commit 4 years agopypi mbpls} Downloads
Pymultiomics ⭐ 9
Python toolbox for multi-omics data mapping and analysis
total releases 5most recent commit a year ago
Npdtools ⭐ 8
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
most recent commit 4 years ago
Workflow4metabolomics ⭐ 8
Workflow4Metabolomics meta repository
most recent commit 2 years ago
Fiora ⭐ 7
Fiora is an in silico fragmentation algorithm for small compounds and produces simulated tandem mass spectra (MS/MS). The framework uses a graph neural network as the core module and edge prediction to identify likely bond cleavages and fragment ion intensities.
most recent commit 3 months ago
Mwtab ⭐ 7
The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.
dependent packages 1total releases 20most recent commit 2 years agopypi mwtab} Downloads
Cyclobranch ⭐ 7
A tool for mass spectrometry data analysis.
most recent commit 8 months ago
Py Sspa ⭐ 7
Single sample pathway analysis tools for omics data
most recent commit 3 months ago
Metamapp ⭐ 7
R codes for creating metamapp graphs and files
most recent commit 2 years ago
Metabridge_shiny ⭐ 6
🕸 Network-based multi-omic integration of metabolomics data.
most recent commit a year ago
Sm Engine ⭐ 6
Engine for metabolite annotation for imaging mass spectrometry
most recent commit 6 years ago
The 2 Most Depended On Bioinformatics Metabolomics Open Source Projects
The 4 Latest Releases In Bioinformatics Metabolomics Open Source Projects
Metaspace ⭐ 39
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
total releases 32latest release September 21, 2023most recent commit 4 months ago
Pymultiomics ⭐ 9
Python toolbox for multi-omics data mapping and analysis
total releases 5latest release March 24, 2022most recent commit a year ago
Mbpls ⭐ 10
(Multiblock) Partial Least Squares Regression for Python
dependent packages 2total releases 15latest release October 30, 2018most recent commit 4 years agopypi mbpls} Downloads
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