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The Top 23 Bioinformatics Genome Open Source Projects

Open source projects categorized as Bioinformatics Genome
Categories > Data Processing > Bioinformatics
Categories > Science > Genome
Phigaro ⭐ 43
Phigaro is a scalable command-line tool for predicting phages and prophages
total releases 37most recent commit 4 months ago
Pato ⭐ 42
PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
most recent commit 7 months ago
Metachip ⭐ 42
Horizontal gene transfer (HGT) identification pipeline
total releases 61most recent commit a year ago
Metage2metabo ⭐ 42
From annotated genomes to metabolic screening in large scale microbiotas
total releases 33most recent commit 3 months ago
Seqarray ⭐ 41
Data management of large-scale whole-genome sequence variant calls (Development version only)
most recent commit 3 months ago
Jgi Query ⭐ 40
A simple command-line tool to download data from Joint Genome Institute databases
most recent commit 2 years ago
Haslr ⭐ 39
A fast tool for hybrid genome assembly of long and short reads
most recent commit 4 years ago
Biopython Coronavirus ⭐ 39
Biopython Jupyter Notebook tutorial to characterize a small genome
most recent commit 4 years ago
Bindash ⭐ 39
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
most recent commit 3 months ago
Shinychromosome ⭐ 38
an R/Shiny application for interactive creation of non-circular plots of whole genomes
most recent commit a year ago
Dnapipete ⭐ 38
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
most recent commit a year ago
Lrsim ⭐ 38
10x Genomics Reads Simulator
most recent commit 5 years ago
Agora ⭐ 37
Algorithm For Gene Order Reconstruction in Ancestors
most recent commit a year ago
Edge ⭐ 35
Efficiently keep track of changes to genomes
total releases 68most recent commit 2 years ago
Andi ⭐ 34
♥ Efficient Estimation of Evolutionary Distances
most recent commit 4 months ago
Nam Genomes ⭐ 34
Detailed bioinformatics scripts and methods used in the NAM genome paper.
most recent commit 2 years ago
Uniquekmer ⭐ 33
Generate unique KMERs for every contig in a FASTA file
most recent commit 2 years ago
Dmrichr ⭐ 33
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
most recent commit 7 months ago
Gcv ⭐ 32
Federating genomes with love (and synteny derived from functional annotations)
most recent commit 6 months ago
Panoptes ⭐ 32
Eyes on your (genomic) data
most recent commit 3 years ago
Epic ⭐ 32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
total releases 52most recent commit 5 years ago
Rkmh ⭐ 32
Classify sequencing reads using MinHash.
most recent commit 4 years ago
Popdel ⭐ 32
Population-wide Deletion Calling
most recent commit a year ago
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