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The Top 23 Bioinformatics Cwl Open Source Projects

Open source projects categorized as Bioinformatics Cwl
Categories > Data Processing > Bioinformatics
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Rabix ⭐ 104
[Historical] Reproducible Analyses for Bioinformatics
most recent commit 5 years ago
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74most recent commit a year agonpm cwl-svg} Downloads
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Awe ⭐ 62
workflow and resource management system for bioinformatics data analysis
total releases 43most recent commit 4 years ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 8 months agopypi janis-pipelines.core} Downloads
Virtus ⭐ 28
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
most recent commit 2 years ago
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Sevenbridges R ⭐ 27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
most recent commit 3 years ago
Gdc Workflow Overview ⭐ 23
Overview of GDC Harmonization Workflows
most recent commit a year ago
Hotsub ⭐ 23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
total releases 22most recent commit 5 years ago
Gdc Dnaseq Cwl ⭐ 21
CWL for GDC DNASeq workflows
most recent commit 9 months ago
Pm4ngs ⭐ 21
Project Manager for NGS data analysis
most recent commit 2 years ago
Workflows ⭐ 18
Bioinformatics curated workflows that use Biocontainers tools
most recent commit 5 years ago
Yacle ⭐ 16
Yet Another CWL Engine by Golang
total releases 1most recent commit 5 years ago
Cwl.go ⭐ 15
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
total releases 1most recent commit 5 years ago
Sevenbridges Cwl ⭐ 14
Seven Bridges Python library for programatic generation of CWL workflows.
most recent commit 3 years ago
Clihelpparser ⭐ 13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
most recent commit 3 years ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11most recent commit 3 months ago
Kf Somatic Workflow ⭐ 11
🔬 Somatic workflow for Kids-First
most recent commit 3 months ago
Kf Rnaseq Workflow ⭐ 9
🔬 RNA-Seq workflow for Kids-First DRC
most recent commit 3 months ago
The 3 Most Depended On Bioinformatics Cwl Open Source Projects
The 10 Latest Releases In Bioinformatics Cwl Open Source Projects
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 8 months agopypi janis-pipelines.core} Downloads
Cwl Svg ⭐ 72
A library for generating an interactive SVG visualization of CWL workflows
dependent packages 4total releases 74latest release January 17, 2023most recent commit a year agonpm cwl-svg} Downloads
Awe ⭐ 62
workflow and resource management system for bioinformatics data analysis
total releases 43latest release May 13, 2019most recent commit 4 years ago
Yacle ⭐ 16
Yet Another CWL Engine by Golang
total releases 1latest release March 19, 2019most recent commit 5 years ago
Workflows ⭐ 12
CWL based Bioinformatics Workflows
total releases 11latest release December 13, 2018most recent commit 3 months ago
Cwl.go ⭐ 15
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
total releases 1latest release August 31, 2018most recent commit 5 years ago
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