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The Top 23 C Plus Plus Bioinformatics Genome Open Source Projects

Open source projects categorized as C Plus Plus Bioinformatics Genome
Categories > Data Processing > Bioinformatics
Categories > Programming Languages > C Plus Plus
Categories > Science > Genome
Bowtie2 ⭐ 594
A fast and sensitive gapped read aligner
most recent commit 4 months ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 9 months ago
Hifiasm ⭐ 443
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
most recent commit 3 months ago
Megahit ⭐ 442
Ultra-fast and memory-efficient (meta-)genome assembler
most recent commit a year ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Abyss ⭐ 276
🔬 Assemble large genomes using short reads
most recent commit 8 months ago
Krakenuniq ⭐ 201
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
most recent commit 4 months ago
Blacklist ⭐ 121
Application for making ENCODE Blacklists
most recent commit 3 years ago
Sibeliaz ⭐ 113
A fast whole-genome aligner based on de Bruijn graphs
most recent commit 2 years ago
Arcs ⭐ 86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
most recent commit 5 months ago
Arv ⭐ 75
A fast 23andMe DNA parser and inferrer for Python
total releases 11most recent commit 4 years ago
Bonsai ⭐ 68
Bonsai: Fast, flexible taxonomic analysis and classification
most recent commit 9 months ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Metacache ⭐ 49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
most recent commit a year ago
Seqarray ⭐ 41
Data management of large-scale whole-genome sequence variant calls (Development version only)
most recent commit 3 months ago
Bindash ⭐ 39
Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
most recent commit 4 months ago
Haslr ⭐ 39
A fast tool for hybrid genome assembly of long and short reads
most recent commit 4 years ago
Popdel ⭐ 32
Population-wide Deletion Calling
most recent commit a year ago
Rkmh ⭐ 32
Classify sequencing reads using MinHash.
most recent commit 4 years ago
Mindthegap ⭐ 30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
most recent commit 2 years ago
Pandoras Toolbox For Bioinformatics ⭐ 26
A collection of well-known bioinformatics programs.
most recent commit 9 years ago
Qtip ⭐ 23
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
most recent commit 5 years ago
Genamap ⭐ 22
Visual Machine Learning of Genome-Phenome Associations
most recent commit 4 years ago
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