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The Top 23 Bioconda Open Source Projects

Open source projects categorized as Bioconda
Categories > Bioconda
Bioconda Recipes ⭐ 1,539
Conda recipes for the bioconda channel.
most recent commit 4 months ago
Multiqc ⭐ 1,159
Aggregate results from bioinformatics analyses across many samples into a single report.
most recent commit a month ago
Orthofinder ⭐ 547
Phylogenetic orthology inference for comparative genomics
most recent commit a year ago
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8most recent commit 4 months ago
Genomepy ⭐ 355
genes and genomes at your fingertips
dependent packages 5total releases 36most recent commit a year agopypi genomepy} Downloads
Bioconvert ⭐ 344
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
total releases 34most recent commit 5 months ago
Fitter ⭐ 336
Fit data to many distributions
dependent packages 5total releases 24most recent commit 4 months agopypi fitter} Downloads
Metawrap ⭐ 320
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
most recent commit 9 months ago
Survivor ⭐ 299
Toolset for SV simulation, comparison and filtering
most recent commit 5 months ago
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 8 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Coverm ⭐ 237
Read coverage calculator for metagenomics
dependent packages 1total releases 9most recent commit 4 months agocargo coverm} Downloads
Ngmlr ⭐ 230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
most recent commit 3 years ago
Roary ⭐ 219
Rapid large-scale prokaryote pan genome analysis
total releases 83most recent commit 2 years ago
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42most recent commit 4 months agopypi nf-core} Downloads
Pbbioconda ⭐ 195
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
most recent commit a year ago
Modules ⭐ 180
Repository to host tool-specific module files for the Nextflow DSL2 community!
most recent commit 4 months ago
Rust Bio Tools ⭐ 154
A set of command line utilities based on Rust-Bio.
total releases 85most recent commit 10 months ago
Longshot ⭐ 142
diploid SNV caller for error-prone reads
most recent commit 4 months ago
Alfred ⭐ 129
BAM Statistics, Feature Counting and Annotation
most recent commit 4 months ago
Sars Cov 2 ⭐ 127
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
most recent commit 2 years ago
Das_tool ⭐ 124
DAS Tool
most recent commit 4 months ago
Pyrodigal ⭐ 111
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
dependent packages 14total releases 60most recent commit 4 months agopypi pyrodigal} Downloads
The 10 Most Depended On Bioconda Open Source Projects
Pyrodigal ⭐ 111
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
dependent packages 14total releases 60latest release November 27, 2023most recent commit 4 months agopypi pyrodigal} Downloads
Fitter ⭐ 336
Fit data to many distributions
dependent packages 5total releases 24latest release August 08, 2023most recent commit 4 months agopypi fitter} Downloads
Genomepy ⭐ 355
genes and genomes at your fingertips
dependent packages 5total releases 36latest release June 14, 2023most recent commit a year agopypi genomepy} Downloads
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36latest release February 08, 2019most recent commit 2 years agopypi cmapPy} Downloads
Anndata2ri ⭐ 104
Convert between AnnData and SingleCellExperiment
dependent packages 4total releases 11latest release August 24, 2023most recent commit 4 months agopypi anndata2ri} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42latest release December 20, 2023most recent commit 4 months agopypi nf-core} Downloads
Ribocode ⭐ 28
release version
dependent packages 1total releases 22latest release July 29, 2022most recent commit 2 years agopypi RiboCode} Downloads
Cellbrowser ⭐ 93
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
dependent packages 1total releases 160latest release January 23, 2023most recent commit a year agopypi cellbrowser} Downloads
Coverm ⭐ 237
Read coverage calculator for metagenomics
dependent packages 1total releases 9latest release February 24, 2021most recent commit 4 months agocargo coverm} Downloads
The 10 Latest Releases In Bioconda Open Source Projects
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42latest release December 20, 2023most recent commit 4 months agopypi nf-core} Downloads
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103latest release December 01, 2023most recent commit 4 months ago
Pyrodigal ⭐ 111
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
dependent packages 14total releases 60latest release November 27, 2023most recent commit 4 months agopypi pyrodigal} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Ega Download Client ⭐ 83
A Python-based EGA download client
total releases 40latest release October 26, 2023most recent commit 7 months ago
Instrain ⭐ 104
Bioinformatics program inStrain
total releases 59latest release August 25, 2023most recent commit 9 months ago
Staramr ⭐ 75
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
total releases 18latest release August 24, 2023most recent commit 9 months ago
Anndata2ri ⭐ 104
Convert between AnnData and SingleCellExperiment
dependent packages 4total releases 11latest release August 24, 2023most recent commit 4 months agopypi anndata2ri} Downloads
Fitter ⭐ 336
Fit data to many distributions
dependent packages 5total releases 24latest release August 08, 2023most recent commit 4 months agopypi fitter} Downloads
Sniffles ⭐ 479
Structural variation caller using third generation sequencing
total releases 8latest release July 27, 2023most recent commit 4 months ago
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