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The Top 22 Bam Files Open Source Projects

Open source projects categorized as Bam Files
Categories > Bam Files
Gw ⭐ 118
Genome browser and variant annotation
most recent commit 6 months ago
Learning_bam_file ⭐ 103
Learning the Sequence Alignment/Map format
most recent commit 10 months ago
Msisensor ⭐ 99
microsatellite instability detection using tumor only or paired tumor-normal data
most recent commit 3 years ago
Altanalyze ⭐ 72
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
most recent commit 2 years ago
Bioalignments.jl ⭐ 51
Sequence alignment tools
most recent commit a year ago
Pytabix ⭐ 51
📇 Retrieve data in genomic intervals with a Python interface for tabix.
dependent packages 20total releases 2most recent commit 7 years agopypi pytabix} Downloads
Needlestack ⭐ 39
Multi-sample somatic variant caller
most recent commit 4 years ago
Covtobed ⭐ 36
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
most recent commit 2 years ago
Picardmetrics ⭐ 34
🚦 Run Picard on BAM files and collate 90 metrics into one file.
most recent commit 7 years ago
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2most recent commit 3 years ago
Portcullis ⭐ 28
Splice junction analysis and filtering from BAM files
most recent commit 2 years ago
Xam.jl ⭐ 24
Parse and process SAM and BAM formatted files
most recent commit 5 months ago
Phat ⭐ 17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
most recent commit 2 years ago
Ribotish ⭐ 16
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
total releases 18most recent commit 2 years ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit 2 years ago
Angsd Wrapper ⭐ 13
Utilities for analyzing next generation sequencing data.
most recent commit 4 years ago
Readdatastores.jl ⭐ 10
Datastores for reads, not your papa's FASTQ files.
most recent commit a year ago
Somaticfreq ⭐ 8
knowledge-based genotyping of cancer hotspots from the tumor BAM files
most recent commit 3 years ago
Bamscope ⭐ 7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
most recent commit 6 months ago
Bamsplit ⭐ 7
Split a BAM file by haplotype support
most recent commit 7 years ago
Sequencing_tools ⭐ 6
A python package storing different tools for different NGS operations
most recent commit 3 years ago
Bamdash ⭐ 6
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
most recent commit 6 months ago
The 2 Most Depended On Bam Files Open Source Projects
Pytabix ⭐ 51
:card_index: Retrieve data in genomic intervals with a Python interface for tabix.
dependent packages 20total releases 2latest release March 21, 2015most recent commit 7 years agopypi pytabix} Downloads
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2latest release August 16, 2021most recent commit 3 years ago
The 3 Latest Releases In Bam Files Open Source Projects
Gonetics ⭐ 30
Go / Golang Bioinformatics Library
dependent packages 2total releases 2latest release August 16, 2021most recent commit 3 years ago
Ribotish ⭐ 16
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
total releases 18latest release April 14, 2021most recent commit 2 years ago
Pytabix ⭐ 51
:card_index: Retrieve data in genomic intervals with a Python interface for tabix.
dependent packages 20total releases 2latest release March 21, 2015most recent commit 7 years agopypi pytabix} Downloads
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