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The Top 23 Bioinformatics Alignment Open Source Projects

Open source projects categorized as Bioinformatics Alignment
Categories > Data Processing > Alignment
Categories > Data Processing > Bioinformatics
Pynast ⭐ 9
Python Nearest Alignment Space Termination tool (PyNAST): Official repository for software and unit tests
most recent commit 6 months ago
Elynx ⭐ 9
Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
total releases 24most recent commit 8 months ago
Famli ⭐ 8
Functional Analysis of Metagenomes by Likelihood Inference
total releases 3most recent commit 4 years ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
Gao S Sb ⭐ 8
A toolbox for bioinformatics works in Dr. Gao's lab.
most recent commit 6 years ago
Nwalgo ⭐ 8
Needleman-Wunsch Alignment in Go
dependent packages 1total releases 1most recent commit 8 years ago
Pxblat ⭐ 8
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
most recent commit 3 months ago
Pftools3 ⭐ 7
A suite of tools to build and search generalized profiles
most recent commit a year ago
Rs Vgaligner ⭐ 7
Rust implementation of ekg's dozyg
most recent commit 2 years ago
Bionim ⭐ 7
A collection of useful algorithms and data structures for bioinformatics
most recent commit 3 years ago
Pylazybam ⭐ 7
A pure python lazy BAM parser
most recent commit 3 years ago
Covid 2019 ⭐ 7
Analysis of Coronavirus outbreak data with Pharo
most recent commit 9 months ago
Fma_finder ⭐ 7
visualization, functional module alignment
most recent commit 8 years ago
Scrubby ⭐ 7
Background depletion/extraction using k-mer and/or alignment methods 🐼
most recent commit a year ago
Teacheng ⭐ 6
A Teaching Engine for Genomics
most recent commit 6 years ago
Gotoh ⭐ 6
Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
most recent commit 4 years ago
Biodownloader ⭐ 6
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
most recent commit 6 years ago
Radpipe ⭐ 6
Daren's RADseq pipeline. Currently in development.
most recent commit 7 years ago
Rs Abpoa ⭐ 6
Rust bindings for the abPOA partial order aligner
most recent commit 2 years ago
Tag Seq ⭐ 6
3’ Tag RNA-seq pipeline (Work in progress)
most recent commit 3 years ago
Exmachina ⭐ 6
Sequence aligner for accurate template-based protein structure prediction
most recent commit 3 years ago
Ortho2align ⭐ 5
ortho2align is a lncRNA ortholog discovery CLI tool based on syntenic regions and statistical assessment of alignment nonrandomness.
most recent commit 9 months ago
Mica Aligner ⭐ 5
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
most recent commit 9 years ago
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