Idemux
Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepbinner | 108 | 3 years ago | 31 | gpl-3.0 | Python | |||||
| a signal-level demultiplexer for Oxford Nanopore reads | ||||||||||
| Flexbar | 59 | 5 years ago | 5 | bsd-3-clause | C++ | |||||
| flexible barcode and adapter removal | ||||||||||
| Indrops | 48 | 6 years ago | 31 | Python | ||||||
| Pipeline for processing inDrops sequencing data | ||||||||||
| Deeplexicon | 30 | 4 months ago | 7 | mit | Jupyter Notebook | |||||
| Signal based nanopore RNA demultiplexing with convolutional neural networks | ||||||||||
| Fastq_utils | 29 | a year ago | gpl-3.0 | C | ||||||
| Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification. | ||||||||||
| Pheniqs | 16 | 2 years ago | 7 | other | C++ | |||||
| Fast and accurate sequence demultiplexing | ||||||||||
| Gbsx | 14 | 8 years ago | 1 | gpl-3.0 | Java | |||||
| GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments | ||||||||||
| Proseq2.0 | 14 | a year ago | 5 | bsd-2-clause | Shell | |||||
| Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing | ||||||||||
| Porefume | 12 | 7 years ago | 1 | mit | Python | |||||
| Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing | ||||||||||
| Larry | 10 | a year ago | Jupyter Notebook | |||||||
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