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Search results for segmentation volume
segmentation
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volume
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39 search results found
Miccai Opensourcepapers
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959
MICCAI 2019-2023 Open Source Papers
U Net Brain Tumor
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351
U-Net Brain Tumor Segmentation
Ffn
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289
Flood-Filling Networks for instance segmentation in 3d volumes.
Evaluatesegmentation
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247
A program to evaluate the quality of image segmentations.
Cloud Volume
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120
Read and write Neuroglancer datasets programmatically.
Seg3d
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97
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
Navis
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79
Python library for analysis of neuroanatomical data.
Gala
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59
Automatic segmentation of electron microscopy volumes
Chunkflow
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47
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
Imtool3d_td
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32
3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
3d Prostate Segmentation
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28
Segmentation of prostate from MRI scans
Slicersegmenteditorextraeffects
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24
Many additional segmentation tools for 3D Slicer's Segment Editor
Ray
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23
Automatic segmentation of electron microscopy volumes
Deep Segmentation Features For Weakly Supervised 3d Disease Classification In Chest Ct
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21
Weakly supervised 3D classification of multi-disease chest CT scans using multi-resolution deep segmentation features via dual-stage CNN architecture (DenseVNet, 3D Residual U-Net).
Trained Models
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19
Trained TensorFlow models for 3D image processing
Opencoviddetector
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17
New virsion for multi-categories were available. Since too many changes above old virsion, please refer to this site https://github.com/ChenWWWeixiang/diagnosis_covid1
Brain Tumor Segmentation
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16
Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
Domain Adaptive Segmentation
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15
Domain adaptation segmentation for volume EM imaging
Arterynetwork
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15
A pipeline to extract vessels from MR images and perform analysis.
Antsregistration Maget
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14
A reimplementation of MAGeTbrain using only ANTs tools.
Ganseg
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13
Framework for medical image segmentation using deep neural networks
Multi Planar Prostate Segmentation
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13
sourcecode of multi-planar prostate segmentation (ISBI publication in 2018)
Pyvol
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13
volume calculation and segmentation
Opencl Level Set Segmentation
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13
Parallel/GPU level set volume segmentation using OpenCL
Gasnet
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13
source code of GASNet.
Gmm Hmrf
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12
GMM-Based Hidden Markov Random Field for Color Image and 3D Volume Segmentation
Vessel3ddl
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12
Automated Multiscale 3D Feature Learning for Vessels Segmentation in Thorax CT Images
Deep Negative Volume
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12
Deep Negative Volume Segmentation - automated 3D CT segmentation of body joints for dentistry
Lits Liver Tumor Segmentaton Challenge
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9
LiTS (Liver Tumor Segmentation) Challenge
Bigcat
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8
Collaborative volume annotation and segmentation with BigDataViewer
Ms Cmr2019
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8
Code for the 2019 Multi-sequence Cardiac MR Segmentation Challenge.
E2dhipseg
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7
This contains official implementation for Extended 2D Volumetric Consensus Hippocampus Segmentation
Choroidsegmentation
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7
Open-source algorithm for automatic choroid segmentation of OCT volume reconstructions. This software was developed by the HMR Biophotonics Lab, Hospital Maisonneuve-Rosemont, Montreal, Quebec, Canada (biophotonics.ca). It is open source and it was released under the GNU GENERAL PUBLIC LICENSE v3. It is only for research purposes. The algorithm is described in the paper "Open-source algorithm for automatic choroid segmentation of OCT volume reconstructions", Javier Mazzaferri, Luke Beaton, Gisèl
Mu Net
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7
Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
Map_3dvolume
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7
Super-Fast mAP evaluation for large 3D volumes, Visual Computing Group at Harvard University
Dvidsparkservices
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7
Spark implemented EM reconstruction software workflows
Brain_tumour_segmentation
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7
Code for training a 3DUnet for Brain tumour segmentation from Brats 2019 dataset; for feature extraction from the segmented volumes and for survival prediction. Run train.py for training, segment.py for segmenting test scans and evaluate.py for evaluating the performance of those segmentations. Basic code also written to perform survival prediction with a random forest classifiier.
Liver Segmentation
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5
LiTs Challenege Semantic Segmentation of Liver from CT Scans
Deeprad
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5
Evaluation Metrics
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5
Evaluation of cardiac MRI predictions with given metrics
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1-39 of 39 search results
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