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Search results for visualization scrna seq

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10 search results found

Cellxgene ⭐ 544

An interactive explorer for single-cell transcriptomics data

Scrnatoolvis ⭐ 169

Useful functions to make your scRNA-seq plot more cool!

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Sccustomize ⭐ 142

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Cellxgene_vip ⭐ 111

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

Cirrocumulus ⭐ 63

Bring your single-cell data to life

Cellxgene Gateway ⭐ 40

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

Harmony framework for connecting scRNA-seq data from discrete time points

Single cell interactive plotting tools

Dea_seurat ⭐ 6

A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.

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