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Search results for variants nextflow

2 search results found

Awesome Nextflow ⭐ 448

A curated list of nextflow based pipelines

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Callings Nf ⭐ 76

GATK RNA-Seq Variant Calling in Nextflow

Rare Disease Wf ⭐ 49

(WIP) best-practices workflow for rare disease

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Needlestack ⭐ 39

Multi-sample somatic variant caller

List of IARC bioinformatics nextflow pipelines

Deepvariant ⭐ 26

Deep Variant as a Nextflow pipeline

Maliampi ⭐ 19

Maximum Likelihood Amplicon Pipeline

NeoFlow: a proteogenomics pipeline for neoantigen discovery

Please consider using/contributing to https://github.com/nf-core/sarek

Assembly and intrahost / low-frequency variant calling for viral samples

Wgs Structvar ⭐ 8

Whole Genome Sequenceing Structural Variation Pipelines

Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

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