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Search results for variants filtering

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genetic variant expressions, annotation, and filtering for great good.

Smart Variant Filtering ⭐ 29

ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algebraic approach to incorporate sample based filtering into the calling. This allows to intuitively control the FDR for arbitrary filtering scenarios.

Garfield Ngs ⭐ 16

GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS

Clinical Filter ⭐ 14

filtering trio-based genetic variants in VCFs for clinical review

Mito Genotyping ⭐ 13

Repo for scripts for Ludwig et al mtDNA genotyping

Bioscripts ⭐ 9

Scripts for bioinformatics data processing and analysis

Gap2Seq is a gap filling and insertion genotyping tool.

Filters for Next Generation Sequencing

VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF files.

Tb_variant_filter ⭐ 5

A tool for filtering VCF files (relative to M. tuberculosis H37Rv)

Allows one to manipulate a VCF as a MultiIndex Pandas DataFrame

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