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Mutscan ⭐ 127

Detect and visualize target mutations by scanning FastQ files directly

Pipeline Structural Variation ⭐ 87

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

Pipeline Umi Amplicon ⭐ 21

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

Automated human exome/genome variants detection from FASTQ files

An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies

A tool to detect structural variant

Ensemblevariantcallingpipeline ⭐ 10

The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (Mutect2, Strelka2, Varscan2, MuSE) and indel variant calling from 3 variant callers (Mutect2, Strelka2, Varscan2).

Pneumocat ⭐ 8

Pneumococcal Capsular Typing tool for NGS data

Sentieon Dnascope Ml ⭐ 7

Sentieon DNAscope + Machine Learning Model

Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types

Targeted and Mapping-Free Variant Calling in FastQ Reads of Bacterial Genomes

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