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Search results for variant analysis
variant-analysis
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26 search results found
Hexraystoolbox
⭐
391
Hexrays Toolbox - Find code patterns within the Hexrays AST
Hgvs
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226
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Slivar
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221
genetic variant expressions, annotation, and filtering for great good.
Codeql
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165
GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.
Echtvar
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124
using all the bits for echt rapid variant annotation and filtering
Open Cravat
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98
A modular annotation tool for genomic variants
Simug
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58
simuG: a general-purpose genome simulator
Arioc
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54
Arioc: GPU-accelerated DNA short-read alignment
Platinumgenomes
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42
The Platinum Genomes Truthset
Biocommons.seqrepo
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34
non-redundant, compressed, journalled, file-based storage for biological sequences
Witty.er
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26
What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
Gnomad_db
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23
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
Tachyon
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17
High-level API for storing and querying sequence variant data
Phenomenet Vp
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17
A phenotype-based tool for variant prioritization in WES and WGS data
Vvp Pub
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17
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
Bioutils
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16
provides common tools and lookup tables used primarily by the hgvs and uta packages
Atom
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12
Atom is a novel intermediate representation for applications and a standalone tool that is powered by chen.
Anyvar
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11
[in development] Proof-of-Concept variation translation, validation, and registration service
Virheat
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9
Visualize microbial evolution at the SNP level!
Triti Map
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9
A Snakemake-based pipeline for gene mapping in Triticeae.
Happyr
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9
R tools to interact with hap.py output
Vcfpp
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9
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
Virtual Normal Correction
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6
Set of commandline tools for analysis of tumor variants without a matching normal. Method described in Genome Research: http://genome.cshlp.org/content/25/9/1382.full
Happycompare
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6
Reporting toolbox for happy output
Plot Vcf
⭐
5
visual analysis of your VCF files
Tatajuba
⭐
5
Identification and classification of homopolymeric tracts from reads.
Related Searches
Variants Variant Analysis (13)
Genomics Variant Analysis (12)
Vcf Variant Analysis (9)
Python Variant Analysis (9)
Bioinformatics Variant Analysis (8)
Genome Variant Analysis (5)
Shell Variant Analysis (5)
Variant Analysis Vcf Files (4)
Genetics Variant Analysis (3)
1-26 of 26 search results
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