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43 search results found
Recordlinkage
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808
A powerful and modular toolkit for record linkage and duplicate detection in Python
Asreview
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525
Active learning for systematic reviews
Pdb Tools
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319
A dependency-free cross-platform swiss army knife for PDB files.
Coronawatchnl
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140
Numbers concerning COVID-19 disease cases in The Netherlands by RIVM, LCPS, NICE, ECML, and Rijksoverheid.
Haddock3
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76
Official repo of the modular BioExcel version of HADDOCK
Prodigy
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76
Predict the binding affinity of protein-protein complexes from structural data
Pyalex
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62
A Python library for OpenAlex (openalex.org)
Synergy Dataset
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43
SYNERGY - Open machine learning dataset on study selection in systematic reviews
Haddock Tools
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41
Set of useful HADDOCK utility scripts
Awesome Utrecht University
⭐
40
A curated list of awesome open source projects from Utrecht University.
Yoda
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36
A system for reliable, long-term storing and archiving large amounts of research data during all stages of a study.
Datahugger
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27
One downloader for many scientific data and code repositories! DOI👐Data
Asreview Covid19
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25
Extension that adds Covid-19 related datasets to ASReview
Uucls
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25
This is a library of latex classes for creating documents according to the Utrecht University style guide.
Asreview Insights
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23
Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB
Bigtrace
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21
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
Webgl Path Tracer
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19
Game and Media Technology MSc at Utrecht University
Powerfit
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19
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
Haddock Antibody Antigen
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17
Material to run the HADDOCK antibody-antigen modelling protocol
R Data Cafe
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17
R Cafe community event Utrecht University
Deeprank Gnn Esm
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14
Graph Network for protein-protein interface including language model features
Asreview Wordcloud
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14
ASReview extension to generate wordcloud from data files.
Asreview Makita
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14
Workflow generator for simulation studies using the command line interface of ASReview LAB
Asreview Datatools
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13
Tool to preprocess datasets for ASReview
Haddocking.github.io
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13
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Arctic3d
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12
Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
Comdet
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12
ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
Dom_utrecht
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11
Detection of Molecules plugin for ImageJ, Utrecht University
Dataprivacyhandbook
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10
Repository for the Data Privacy Handbook @UtrechtUniversity, a practical guide on handling personal data in scientific research
Getting Started
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10
Getting started with GitHub @UtrechtUniversity
Asreview Academy
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10
This repository contains open teaching materials on using ASReview
Fair Cheatsheets
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9
Make your research data and code FAIR with the UU FAIR Cheatsheets!
Bm5 Clean
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9
Docking benchmark 5 - cleaned and ready to use for HADDOCK
Geonewsminer
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8
The GeoNewsMiner (GNM): An interactive spatial humanities tool to visualize geographical references in historical newspapers
Prodigy Lig
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8
Prediction of Protein-Small molecule binding affinities
Osmenrich
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7
Enrich sf data with geographic features from OpenStreetMaps.
Swords Uu
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7
Implementation of the SWORDS framework for Utrecht University.
Animal Sounds
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7
Python modules for detecting Chimpanze sounds in bioacoustic datasets using machine learning and deep learning.
Ricgraph
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6
Ricgraph - Research in context graph
Best Practices
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5
Best practices for git, GitHub, and research software development. Tailored for researchers of Utrecht University
Correlescence
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5
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
Awesome Citizen Science Nl
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5
A curated list of awesome Citizen Science Projects in the Netherlands
Asreview Hyperopt
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5
Hyper parameter optimization extension for ASReview. EXPERIMENTAL
1-43 of 43 search results
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