Awesome Open Source

Programming Languages

Search results for tumor

16 search results found

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Personal Cancer Genome Reporter (PCGR)

Ecotyper ⭐ 118

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

Gatk4 Somatic Snvs Indels ⭐ 54

This repo will be archived soon, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Sturgeon ⭐ 18

🦀 Tumor growth simulation in C++/R

Tool to estimate purity of tumor samples exploiting DNA Methylation data

Brain Tumor Mri Dataset ⭐ 8

Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.

Cancerdiagnosis Teachingmaterial ⭐ 7

Detect whether a tumor is benign or cancerous

Gbm_pcnsl_cnn_modeling ⭐ 5

Deep Learning for Automatic Differential Diagnosis of Primary Central Nervous System Lymphoma and Glioblastoma: Multi-parametric MRI based Convolutional Neural Network Model

Resseg Ijcars ⭐ 5

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"

LION: Born from MOOSE 2.0 lineage, this king excels in PET tumor segmentation. Harnessing 1014 Autopet datasets, it offers unparalleled precision in lesion detection. Tailor workflows, integrate seamlessly, and experience next-gen tech today!

Segmentation Eval ⭐ 5

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

Related Searches

Python Tumor (9)

Machine Learning Tumor (6)

Segmentation Tumor (6)

Jupyter Notebook Tumor (6)

Cancer Tumor (5)

1-16 of 16 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.