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Search results for transcription factor binding

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9 search results found

Chip Seq Analysis ⭐ 586

ChIP-seq analysis notes from Ming Tang

Dnabert_2 ⭐ 72

The official implementation of DNABERT-2.

Tf Bind Transformer ⭐ 45

A repository with exploration into using transformers to predict DNA ↔ transcription factor binding

Haystack_bio ⭐ 35

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks

Rtfbs_db ⭐ 21

Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.

Ⓜ️ Tool for motif conservation analysis

A Pythonic interface to query and access JASPAR transcription factor motifs

Remapenrich ⭐ 5

ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.

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1-9 of 9 search results

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