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Search results for sourmash

11 search results found

Sourmash ⭐ 431

Quickly search, compare, and analyze genomic and metagenomic data sets.

Genome Grist ⭐ 34

map Illumina metagenomes to genomes!

Charcoal ⭐ 31

Remove contaminated contigs from genomes using k-mers and taxonomies.

A database for signatures of public genomic sources

Sourmashconsumr ⭐ 16

Working with the outputs of sourmash in R

Sourmash_plugin_branchwater ⭐ 9

Python plugin for fast search & gather

2020 Paper Sourmash Gather ⭐ 7

Here we describe an extension of MinHash that permits accurate compositional analysis of metagenomes with low memory and disk requirements.

Resources ⭐ 7

Streaming de Bruijn and Compact de Bruijn Graph Algorithms

2020 07 22 Mag Search ⭐ 5

Distillerycats ⭐ 5

Find disease associations across metagenomes with k-mers using sourmash, and then recover pangenomic accessory elements using spacegraphcats.

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Python Sourmash (7)

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