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Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

Wsi To Dicom Converter ⭐ 63

Conversion tool/library for converting whole slide images to DICOM

Compay Syntax ⭐ 48

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Deeplearning Digital Pathology ⭐ 32

Full package for applying deep learning to virtual slides.

Slideslicer ⭐ 9

a toolbox for manipulation of digital pathology slides and annotations

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