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Search results for single cell sequencing

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10 search results found

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Tidysinglecellexperiment ⭐ 32

Brings SingleCellExperiment objects to the tidyverse

Split Seq_demultiplexing ⭐ 25

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior

This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.

Tool for modelling of mitochondrial heteroplasmy

Spreading Correction ⭐ 11

Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries", Anton J.M. Larsson, Geoff Stanley, Rahul Sinha, Irving L. Weissman and Rickard Sandberg

Wilson_muto_ncomm_2022 ⭐ 8

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.

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