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Search results for single cell gene expression
gene-expression
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single-cell
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14 search results found
Awesome Single Cell
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2,784
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Salmon
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661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Isee
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217
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
Powsimr
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102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
Basics
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81
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
Scope
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56
Fast visualization tool for large-scale and high dimensional single-cell data
Meringue
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33
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
Ouija
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29
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
Scnanogps
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29
Single cell Nanopore sequencing data for Genotype and Phenotype
Clonealign
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25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
Asap
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24
ASAP : Automated Single-cell Analysis Pipeline
Switchde
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15
Inference of switch-like differential expression along single-cell trajectories
Gear
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10
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Resvae
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7
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
Related Searches
R Single Cell (121)
Python Single Cell (99)
R Gene Expression (87)
Rna Seq Single Cell (78)
Bioinformatics Single Cell (76)
1-14 of 14 search results
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