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Ngs Variants Training ⭐ 22

GitHub for the SIB courses NGS - Genome variant analysis

Sentieon Dnaseq ⭐ 15

Sentieon DNAseq

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.

Sentieon Dnascope Ml ⭐ 7

Sentieon DNAscope + Machine Learning Model

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