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Search results for sequence analysis
sequence-analysis
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42 search results found
Seqtk
⭐
1,148
Toolkit for processing sequences in FASTA/Q formats
Bioawk
⭐
518
BWK awk modified for biological data
Biotite
⭐
515
A comprehensive library for computational molecular biology
Seqan3
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373
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Chromap
⭐
166
Fast alignment and preprocessing of chromatin profiles
Readfq
⭐
105
Fast multi-line FASTA/Q reader in several programming languages
Kalign
⭐
105
A fast multiple sequence alignment program.
Pyhmmer
⭐
98
Cython bindings and Python interface to HMMER3.
Biofsharp
⭐
94
Open source bioinformatics and computational biology toolbox written in F#.
Snpgenie
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94
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Lasagne4bio
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88
Ilearnplus
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57
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Flexidot
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56
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
Wub
⭐
52
Tools and software library developed by the ONT Applications group
Bioalignments.jl
⭐
51
Sequence alignment tools
Protr
⭐
50
🧬 Toolkit for generating various numerical features of protein sequences
Htstream
⭐
48
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Sequence_manipulation_suite
⭐
45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
Pymsaviz
⭐
41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Gfapy
⭐
39
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Htsbox
⭐
38
My experimental tools on top of htslib. NOT OFFICIAL!!!
Peptides.py
⭐
36
Physicochemical properties, indices and descriptors for amino-acid sequences.
Spacepharer
⭐
28
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Lightmotif
⭐
28
A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
Geneblocks
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27
💠 Find common blocks and differences between DNA sequences
Deep Music Genre Classification
⭐
20
🎵 Using Deep Learning to Categorize Music as Time Progresses Through Spectrogram Analysis
Dandd
⭐
18
Tool to estimate deltas for sequence sets and answer questions about relative contribution
Biocpp Core
⭐
16
BioC++ core library (alphabet, meta, ranges)
Aim
⭐
15
AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155
Sabreur
⭐
14
fast, reliable and handy demultiplexing tool for fastx files
Smof
⭐
12
Explore and analyze biological sequence data
Ggseqplot
⭐
10
R library for visualizing (social science) sequence data using ggplot2
Gluetools
⭐
9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Biocpp Io
⭐
8
BioC++ Input/Output library
Pxblat
⭐
8
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
Dcblast
⭐
8
Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools
Pftools3
⭐
7
A suite of tools to build and search generalized profiles
Classification_benchmark
⭐
7
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
Tirp
⭐
7
code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)
Supersampler
⭐
6
SuperSampler, an efficient scaled size sketching and sketch comparison tool
Disease Pattern Miner
⭐
5
Disease Pattern Miner is a free, open-source mining framework for interactively discovering sequential disease patterns in medical health record datasets.
Medseq
⭐
5
Mixtures of Exponential-Distance Models for Clustering Longitudinal Life-Course Sequences with Gating Covariates and Sampling Weights
1-42 of 42 search results
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