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Search results for scrna seq
scrna-seq
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142 search results found
Singlecell_endodiff_paper
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11
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Dynast Release
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11
Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments
Scatrex
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11
Map single-cell transcriptomes to copy number evolutionary trees.
Scinsight
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11
Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
Came
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11
Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
Scpca Nf
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11
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
Topicvelo
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11
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems
Compartmap
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10
Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
Scspace
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10
an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references
Apackoftheclones
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10
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Cellscopes.jl
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9
A Julia package for single cell and spatial data analysis
Rna Scoop
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9
:shipit: interactive visualization of single-cell transcriptomes
Discbio
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9
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
Scdecaf
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9
Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations
Tmexplorer
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9
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
Panglaodb
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9
metadata and data from the database
St_analysis
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8
A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
Baynorm
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8
Normalization for single cell RNA-seq data
Irescue
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8
A tool to quantify transposable elements expression in scRNA-seq
Scplot
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8
Single cell interactive plotting tools
Scrna
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7
Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
Cellregmap
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7
CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq
Simulation Comparison
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7
Snakemake workflow to benchmark scRNA-seq data simulators
Sclane
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6
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
Scruff
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6
Single Cell RNA-seq UMI Filtering Facilitator
St_pipeline
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6
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
1000 Tools Paper
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6
Code and analysis for the 1000 tools paper
Socube
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6
A simple python package for doublet detection in scRNA-seq data
Neuroblastoma
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6
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
Atac Annotation Benchmark
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6
scripts for manuscript 'benchmarking automated cell type annotation tools for single-cell ATAC-seq data'
Cacimar
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6
cross-species analysis of cell identities, markers and regulations
Dea_seurat
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6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Dropletqc
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5
Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
Scdeepsort_performance_comparison
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5
The source code and results for different methods on annotating external testing datsets of human and mouse.
Sctalk
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5
Intercellular communication analysis for scRNA-seq data
Powsc
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5
power analysis for scRNA-seq
Iscb2022_tidytranscriptomics
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5
Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
Automated Sc Rna Seq Analysis In The Cloud
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5
Pseudocell Tracer
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5
Inferring cellular trajectories from scRNA-seq using Pseudocell Tracer
Ikap
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5
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Scsparkl
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5
scSPARKL is an Apache spark based pipeline for performing variety of preprocessing and downstream analysis of scRNA-seq data.
Mmochi
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5
MultiModal Classifier Hierarchy (MMoCHi)
Related Searches
R Scrna Seq (76)
Single Cell Scrna Seq (54)
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