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ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Simple & Efficient data access for Scala and Scala.js

Tools for working with genomic and high throughput sequencing data.

A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/ (make sure you fork from there)

Seqspark ⭐ 16

SEQSpark documentation

⚡ Functional Scala HTTP server, client, and toolkit.

Process SMRT sequencing kinetic summary to predict regional methylation on large genome

Sc_gestalt ⭐ 9

GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing

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