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Search results for rust genomics

22 search results found

Cellranger ⭐ 314

10x Genomics Single Cell Analysis

Echtvar ⭐ 124

using all the bits for echt rapid variant annotation and filtering

Grep for FASTQ files

Command line utility for manipulating Illumina-generated FASTQ files.

Subset Bam ⭐ 53

Minimap2 Rs ⭐ 46

Rust bindings to minimap2 library

gia: Genomic Interval Arithmetic

Rustybam ⭐ 38

bioinformatics toolkit in rust

Fast FASTQ sample demultiplexing in Rust.

Read specialized NGS formats as data frames in R, Python, and more.

Lightmotif ⭐ 28

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

counts k-mers, written in rust

Guide Counter ⭐ 22

A better, faster way to count guides in CRISPR screens.

ntHash implementation in Rust

Spacepile ⭐ 10

convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.

Fraggenescanrs ⭐ 10

Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.

Rust Msbwt ⭐ 7

place for building up a msbwt resource in Rust

Fastq.bio Serverless ⭐ 7

An interactive web tool for quality control of DNA sequencing data, using Cloudflare workers running WebAssembly

VCF/BCF [un]compressed [un]indexed

Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output

Prot Scriber ⭐ 5

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

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