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Randomly subsample sequencing reads to a specified coverage

Rust Bio Tools ⭐ 154

A set of command line utilities based on Rust-Bio.

Grep for FASTQ files

FASTA and FASTQ parsing in Rust

👷 Fasten toolkit, for streaming operations on fastq files

Command line utility for manipulating Illumina-generated FASTQ files.

Bamtofastq ⭐ 45

Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

Fastqc Rs ⭐ 31

A quality control tool for FASTQ files written in rust

Fastq Rs ⭐ 29

A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust

A FASTA/FASTQ format parser library

Fast and flexible tool for reading, modifying and writing biological sequences

Fastq_set ⭐ 11

Tools for working FASTQ files from sequencers (R1/R2/I1/I2)

Extract subsets of ONT (Nanopore) reads based on time

Toolkit for manipulating FASTA and SAM files

Rs_demultiplex ⭐ 7

Simple demultiplexing of FASTQ, one oligo (barcode) at a time

Remove human reads from a sequencing run

Needletail ⭐ 5

Fast k-mer methods in Rust

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