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Derfinder ⭐ 42

Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Recount3 ⭐ 24

Explore and download data from the recount3 project

Splicejam ⭐ 21

Sashimi plots for RNA-seq data using detected transcripts

Recount Website ⭐ 12

Code for the Recount project

Preprocessing, analyzing, and reporting of RNA-seq data

Regionreport ⭐ 9

Generate HTML report for a set of genomic regions or DESeq2/edgeR results

Brainseq_phase2 ⭐ 9

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium

Workflow for Sequenza, cellularity and ploidy

Speaqeasy ⭐ 6

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

Recount Contributions ⭐ 5

Contribute your human Illumina RNA-seq data to recount2

R package with commonly used functions by the Jaffe lab

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