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Search results for rna seq snakemake

18 search results found

Rna Seq Analysis ⭐ 614

RNAseq analysis notes from Ming Tang

Snakepipes ⭐ 359

Customizable workflows based on snakemake and python for the analysis of NGS data

Rna Seq Star Deseq2 ⭐ 282

RNA-seq workflow using STAR and DESeq2

Sequana ⭐ 136

Sequana: a set of Snakemake NGS pipelines

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Rna Seq Kallisto Sleuth ⭐ 63

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Snakefiles ⭐ 58

🐍 Snakefiles for common RNA-seq data analysis workflows.

Ngs_pipeline ⭐ 31

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Zavolan-Lab Automated RNA-Seq Pipeline

Rna Seq Snakemake ⭐ 20

Snakemake based pipeline for RNA-Seq analysis

Pigx_rnaseq ⭐ 19

Pipeline for RNAseq

Tailseeker ⭐ 18

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Rna Seq Pop ⭐ 17

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

Pyflow Rnaseq ⭐ 15

RNAseq pipeline based on snakemake

Pipelines in genomics

Flexible omics pipeline

Enrichment_analysis ⭐ 10

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.

🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data

Rnaseq_workflow ⭐ 6

snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

Bioinformatics_pipeline ⭐ 5

Bioinformatics Pipeline

As_analysis ⭐ 5

A complete Snakemake pipeline for detecting allele specific expression

Genome_tracks ⭐ 5

A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files powered by the wrapper gtracks for the package pyGenomeTracks.

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