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Search results for rna seq bioinformatics pipeline

bioinformatics-pipeline x

15 search results found

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Rnalysis ⭐ 114

RNA sequencing analysis software

Zika Rnaseq Pipeline ⭐ 73

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)

A fully automated gene annotator from RNA-Seq expression data

GREIN : GEO RNA-seq Experiments Interactive Navigator

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

ASAP : Automated Single-cell Analysis Pipeline

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Cd4 Csaw ⭐ 15

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Workflows ⭐ 12

CWL based Bioinformatics Workflows

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

Ribo Oddr ⭐ 5

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

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