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9 search results found

Snakemake ⭐ 2,030

This is the development home of the workflow management system Snakemake. For general information, see

Rna Seq Star Deseq2 ⭐ 282

RNA-seq workflow using STAR and DESeq2

Dna Seq Gatk Variant Calling ⭐ 138

This Snakemake pipeline implements the GATK best-practices workflow

Dna Seq Varlociraptor ⭐ 76

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

Rna Seq Kallisto Sleuth ⭐ 63

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Snakemake Econ R ⭐ 35

reproducible research project template for R using Renv and snakemake with an econ application

Pigx_rnaseq ⭐ 19

Pipeline for RNAseq

Pigx_bsseq ⭐ 10

bisulfite sequencing pipeline from fastq to methylation reports

A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.

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