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Search results for r transcriptomics
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transcriptomics
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44 search results found
Sccatch
⭐
171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Scde
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163
R package for analyzing single-cell RNA-seq data
Tidybulk
⭐
153
Brings bulk and pseudobulk transcriptomics to the tidyverse
Bambu
⭐
150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Pando
⭐
88
Multiome GRN inference.
Scrattch.hicat
⭐
86
Hierarchical, iterative clustering for analysis of transcriptomics data in R
Genetonic
⭐
74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Singlecellhaystack
⭐
68
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
Tomicsvis
⭐
50
Transcriptomics Visualization R package.
Voyager
⭐
49
From geospatial to spatial -omics
Cosmosr
⭐
46
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.
Ewce
⭐
46
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
Celltalker
⭐
41
Inference of cell-cell communication from single-cell RNAseq data
Scpa
⭐
33
R package for pathway analysis in scRNA-seq data
Bioc_2020_tidytranscriptomics
⭐
18
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
Imsig
⭐
17
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
Scrattch.vis
⭐
17
scRNA-seq data visualization from scrattch
Gwena
⭐
15
Gene Co-expression Network analysis pipeline
Glmmseq
⭐
15
Gene-level general linear mixed model
Glmmseq
⭐
15
Gene-level general linear mixed model
Omics
⭐
14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Compbio Gists
⭐
12
Computational Biology & Bioinformatics Resources
Scrattch
⭐
12
Single cell RNA-seq analysis for transcriptomic type characterization
Scasa
⭐
12
SCASA: Single cell transcript quantification tool
Circompara
⭐
12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Crawdad
⭐
11
Cell-type Relationship Analysis Workflow Done Across Distances
Feser
⭐
11
feseR: Combining feature selection methods for analyzing omics data
Piano
⭐
11
piano - An R/Bioconductor package for gene set analysis
Iasva
⭐
8
Iteratively Adjusted Surrogate Variable Analysis
Tidyomics
⭐
8
Easily install and load packages from the tidyomcis ecosystem
Scrattch.io
⭐
7
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
Gemma.r
⭐
7
An R wrapper for the Gemma RESTful API
Genestructuretools
⭐
7
River
⭐
7
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Trendcatcher
⭐
7
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
Dturtle
⭐
6
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
Tasic2016data
⭐
6
Single cell transcriptomic data from Tasic, et al. (2016)
Sclane
⭐
6
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
Enfusion
⭐
5
The ENsemble Fusion (EnFusion) repo contains a Dockerfile to build a Docker Image that can overlap outputs from 7 fusion detection algorithms, to identify high confidence fusion events.
Gemmaapi.r
⭐
5
An R wrapper for Gemma's restful API (deprecated in favour of https://github.com/PavlidisLab/gemma.R supported for personal use and leftover dependencies).
Microarraypipeline
⭐
5
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
Iscb2022_tidytranscriptomics
⭐
5
Tidy Transcriptomics for Single-cell RNA Sequencing Analyses
Matrixqcvis
⭐
5
Drugfindr
⭐
5
Repository holding the code for the drugfindR R package
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1-44 of 44 search results
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