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Search results for r transcription factors
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transcription-factors
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8 search results found
Dorothea
⭐
105
R package to access DoRothEA's regulons
Netzoor
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85
netZooR is a network biology package implemented in R.
Tftargets
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52
🎯 Human transcription factor target genes.
Bitfam
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23
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
Rtfbs_db
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21
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
Centipede.tutorial
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20
🐛 How to use CENTIPEDE to determine if a transcription factor is bound.
Homerkit
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13
Read HOMER motif analysis output in R.
Sevenc
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11
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Netprophet_2.0
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11
A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
Timeor
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11
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
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