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Search results for r taxonomy
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taxonomy
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23 search results found
Dada2
⭐
428
Accurate sample inference from amplicon data with single nucleotide resolution
Taxize
⭐
256
A taxonomic toolbelt for R
Metacoder
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121
Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
Rfishbase
⭐
98
R interface to the fishbase.org database
Pr2database
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57
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
Taxa
⭐
44
taxonomic classes for R
Rotl
⭐
32
Interface to Open Tree of Life API
Gtdb Taxdump
⭐
29
GTDB taxonomy taxdump files with trackable TaxIds
Taxizedb
⭐
28
Tools for Working with Taxonomic SQL Databases
Taxonomy
⭐
24
taxonomy R packages
Libbib
⭐
23
An R package providing WorldCat API communication, functions for validating and normalizing bibliographic codes, translation from call numbers to subject, and other related utilities helpful for assessment librarians
Taxid Changelog
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21
NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
Worrms
⭐
18
World Register of Marine Species R client
Wikitaxa
⭐
17
taxonomy data from Wikipedia/Wikidata/Wikispecies
Taxastand
⭐
15
Standardize taxonomy across different data sources
Ritis
⭐
15
Integrated Taxonomic Information Service (ITIS) R client
U.taxonstand
⭐
13
R package for standardizing and harmonizing scientific names of plants and animals
Gbif.range
⭐
10
An R package to generate species range maps based on ecoregions and a user-friendly GBIF wrapper
Rgnparser
⭐
9
Parse scientific names using gnparser (https://github.com/gnames/gnparser)
Bactaxr
⭐
8
Bacterial taxonomy construction and evaluation in R
Yatah
⭐
6
Yet Another TAxonomy Handler.
Phylodiv
⭐
6
Phylogenetic Biodiversity Query Tools
Taxo_harmonization
⭐
6
📓 Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices" preprint: 10.32942/osf.io/e3qnz
Splister
⭐
5
match species list against reference list
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1-23 of 23 search results
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