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Search results for r single cell genomics
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single-cell-genomics
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19 search results found
Seurat
⭐
2,025
R toolkit for single cell genomics
Seurat Wrappers
⭐
268
Community-provided extensions to Seurat
Scp
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253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Sccustomize
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142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Scpubr
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117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
Seurat Disk
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111
Interfaces for HDF5-based Single Cell File Formats
Seurat Data
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101
Dataset distribution for Seurat
Swne
⭐
100
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Louper
⭐
43
Convert Seurat objects to 10x Genomics Loupe files.
Loomr
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37
An R-based interface for loom files
Scalign
⭐
28
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
Seuratv3wizard
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26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
Seurat.utils
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19
Various utility functions for Seurat single-cell analysis
Robustsinglecell
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13
Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.
Apackoftheclones
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10
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Amp_phase1_ra
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8
🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
Seuratwizard
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7
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
Timshel 2020
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6
Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)
Treecortreat
⭐
5
TreeCorTreat
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