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Search results for r single cell analysis

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25 search results found

Cellchat ⭐ 548

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

Seurat Wrappers ⭐ 268

Community-provided extensions to Seurat

Immunarch ⭐ 256

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Snapatac ⭐ 227

Analysis Pipeline for Single Cell ATAC-seq

Haplotype-aware CNV analysis from single-cell RNA-seq

Dynmethods ⭐ 107

A collection of 50+ trajectory inference methods within a common interface 📥📤

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Cellchat ⭐ 76

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Scavenge ⭐ 60

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

Simulating single-cell data using gene regulatory networks 📠

Nebulosa ⭐ 50

R package to visualize gene expression data based on weighted kernel density estimation

Seuratv3wizard ⭐ 26

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

BEER: Batch EffEct Remover for single-cell data

SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection

SCASA: Single cell transcript quantification tool

The CanceR Single Cell ExpressioN Toolkit one-line-command applications.

Seuratwizard ⭐ 7

This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

A reference-based solution for single-cell analysis

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