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122 search results found
Seuratwizard
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7
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
Epigenomics_cwl
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7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
Plexdia
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7
Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
Scmagic
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6
Accurately annotating scRNA-seq data using two rounds of reference-based classification
Signals
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6
Single Cell Genomes with Allele Specificity
Novosparc
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6
Reconstruction of spatial context of gene expression with optimal transport
Sclane
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6
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
Fucci Seq
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6
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
Ananseseurat
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6
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Dea_seurat
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6
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
Scruff
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6
Single Cell RNA-seq UMI Filtering Facilitator
Scplant
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6
A versatile framework for single-cell transcriptomic data analysis in plants.
Dturtle
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6
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
Escher
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5
R package to visualize colocalization for single cell & spatially-resolved genomics data
1m Cells
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5
This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells” paper (https://www.biorxiv.org/content/10.1101/2021.06.0
Celltalkdb
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5
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Plaqview
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5
This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.
Scstem
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5
Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience.
Digitaldlsorter
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5
digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data
Scistreer
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5
R/Rcpp implementation of the ScisTree algorithm
Mfa
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5
Probabilistic inference of single-cell bifurcations
Castle
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5
Classification of Single cells by Transfer Learning
Ikap
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5
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Scdrugprio
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5
Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease
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